Skip to Main Content

We investigated whether a genome-scale CD4+ T-cell Perturb-seq screen contains reproducible regulatory architecture beyond ranked hits, statistical noise and connectivity hubs We built a quality-audited regulator × gene × condition operator from a 1.8 TB public CRISPRi atlas using a laptop-scale pipeline. Spectral denoising reduced the operator to 92 empirically supported signal directions, and consensus community detection revealed structure 259 standard deviations above a matched null The strongest result was annotation-blind recovery of mitochondrial Complex I, identified only after clustering, at BH-FDR 1.4 × 10⁻⁷. A second SAGA-centered module was supported by convergent evidence across CORUM, tensor factors and an independent K562 screen, while cross-cell-type analysis across CD4, K562 and RPE1 separated universal from T-cell-specific regulation We also tested the predictive boundary of this structure. Real and shuffled regulator features performed identically for leave-regulator-out prediction, showing that recoverable structure does not imply inductive predictability The result is an open, reproducible analysis and manuscript that others can build on

Team

Placement

Participant

More from Built with Claude: Life Sciences

What I built. Lazarus is an agent that takes a dead research repository that is open, cited, and no longer runnable, and turns it back into a callable…

DoctorDean project preview

Diffuse midline glioma is a paediatric brainstem cancer that is almost uniformly fatal: about ninety percent of children die within two years, and the first…

Faith Ogundimu project preview

Hippocampus AI is the memory and reasoning engine for scientific discovery. Every experiment generates valuable knowledge, but that knowledge becomes…

Disruptors project preview

I used Claude to train a protein language model that can generate an extremophilic version of any enzyme, maintaining its function, while allowing it to…

Jaymin project preview

Many primates are sexually dichromatic — males and females are different colors. I wanted to know how that trait is built genetically, and how it evolved…

www.loom.com/…

About Trialign is a patient-facing clinical trial matcher for oncology. A patient pastes a clinical note, uploads a record, or connects their EHR via SMART on…

Trialign project preview